Erik Hartman

Photo by Åsa Hansdotter

I am a PhD student in computational biology at the infection medicine proteomics lab, Lund University, Sweden. The goal of my PhD is to gain further understanding into protein degradation using computational methods.

I’ve been passionate about science and research for as long as I can remember, and am alumni of Anders Wall Schlolars, the Swedish Society for Young Scientist (Unga Forskare), Society for Science, International Science and Engineering Fair and international Genetically Engineered Machine (iGEM).

selected publications

Mining the endogenous peptidome for peptide binders with deep learning-driven optimization and molecular simulations

Erik Hartman, Firdaus Samsudin, Peter J Bond, and 2 more authors

Jan 2025

Peptide clustering enhances large-scale analyses and reveals proteolytic signatures in mass spectrometry data

Erik Hartman, Fredrik Forsberg, Sven Kjellström, and 6 more authors

Nature Communications, Aug 2024

Bib

@article{Hartman2024,
  title = {Peptide clustering enhances large-scale analyses and reveals proteolytic signatures in mass spectrometry data},
  url = {https://doi.org/10.1038/s41467-024-51589-y},
  doi = {https://doi.org/10.1038/s41467-024-51589-y},
  publisher = {Springer Science and Business Media LLC},
  journal = {Nature Communications},
  author = {Hartman, Erik and Forsberg, Fredrik and Kjellstr\"{o}m, Sven and Petrlova, Jitka and Luo, Congyu and Scott, Aaron and Puthia, Manoj and Malmstr\"{o}m, Johan and Schmidtchen, Artur},
  year = {2024},
  month = aug,
}

Interpreting biologically informed neural networks for enhanced proteomic biomarker discovery and pathway analysis

Erik Hartman, Aaron M. Scott, Christofer Karlsson, and 5 more authors

Nature Communications, Sep 2023

Bib

@article{Hartman2023,
  title = {Interpreting biologically informed neural networks for enhanced proteomic biomarker discovery and pathway analysis},
  volume = {14},
  issn = {2041-1723},
  url = {http://dx.doi.org/10.1038/s41467-023-41146-4},
  doi = {10.1038/s41467-023-41146-4},
  number = {1},
  journal = {Nature Communications},
  publisher = {Springer Science and Business Media LLC},
  author = {Hartman, Erik and Scott, Aaron M. and Karlsson, Christofer and Mohanty, Tirthankar and Vaara, Suvi T. and Linder, Adam and Malmstr\"{o}m, Lars and Malmstr\"{o}m, Johan},
  year = {2023},
  month = sep,
  dimensions = {true},
}